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phenopacket2prompt

GA4GH Phenopacket to LLM prompt

Prompts generated with this code base have been used for:

  • A benchmark of some large language models against a differential diagnostics tool, Exomiser (code here). Our evidence shows Exomiser outperforms the LLMs as per our preprint, data at this zenodo.
  • A comparison of gpt-4o's and Meditron3-70B ability to carry out differential diagnosis when prompted in 10 different languages, results at this medRxiv or zenodo (see also this related link for some more data).