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Base sequence quality implementation #146

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@pfgryz pfgryz commented Jun 15, 2025

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MikolajSzawerda and others added 15 commits May 25, 2025 21:12
* add python mock

* add rust initial implementation

* use session context

* add udaf impl

* add avg and pos

* clear
* implement calculating other stats in quality_quantile UDAF;
* add handling all type of string arrays in quality_histogram UDTF;
* implement operation do_base_sequence_quality;
* add query for base_sequence_quality;
* fix base_sequence_quality_frame & base_sequence_quality_scan;
* fix python api for base_sequence_quality.
# Conflicts:
#	polars_bio/__init__.py
#	polars_bio/range_op.py
#	src/lib.rs
#	src/operation.rs
#	src/query.rs
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3 participants