Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

𝒫robabilistic modeling of RNA velocity ⬱

`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files

A novel method for single-cell diagonal integration: scConfluence

SIMBA: SIngle-cell eMBedding Along with features

MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dominik Heider, and Georges Hattab

Code for Highly Trustworthy Multimodal Learning (HTML) Method on Omics

BraneMF: Integration of Biological Networks for Functional Analysis of Proteins

A pythonic library for analysing immunopeptidomic experiments

Multi-omics Trustworthy Integration Framework (MoTIF)

Main Repository for my MASTER'S THESIS PROJECT

Graph-based Contrastive Learning enable Fast Single-Cell Embedding

Single-Cell Data Analysis Tools

Lightweight Feature selection Python library

Here are the configs for MultiomicsKG. Feel free to add or edit any of these as you see fit. There's a config checker and guidelines here too.

OmicsDI Rest API client in Python

Different python tools to validate and convert SDRF files

Transcriptional and epigenetic signature of muscle tissue cells linked to atrophy

A flask API for the SDRF annotator tool

Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002