Analyze your RNA sequencing data without writing a single line of code

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Single cell Nanopore sequencing data for Genotype and Phenotype

SNP-free RNA editing Identification Toolkit

Automatic Packaging and Distribution of Bioinformatics Pipelines

Clair3-RNA - a long-read small variant caller for RNA sequencing data

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

bioinfo workflow based on snakemake

RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.

Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons

A small python tool for RNA-seq workflows

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.

Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster

pySeqRNA: a python-based package for RNASeq data analysis

An Automatic System for RNA-Seq Data Analysis

RNA-Seq Analysis pipeline using Snakemake workflow

circs_snake : a snakemake-based circRNA detection workflow

A robust Python tool for annotating RNA sequencing data using standardized ontologies and classification systems.